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LOC106450749 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta 1 [ Brassica napus (rape) ]

Gene ID: 106450749, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106450749
Gene description
pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta 1
Locus tag
HID58_064735
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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Location:
chromosome: C5
Exon count:
16
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) C5 NC_063448.1 (6094091..6097683)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) C5 NC_027771.2 (8332585..8336182)

Chromosome C5 - NC_063448.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111206601 Neighboring gene 1-aminocyclopropane-1-carboxylate oxidase 3-like Neighboring gene O-fucosyltransferase 2-like Neighboring gene NEDD8-like protein RUB3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 6-phosphofructokinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables diphosphate-fructose-6-phosphate 1-phosphotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fructose 6-phosphate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycolytic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in photosynthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to glucose IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta 1
Names
BnaC05g09740D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063448.1 Reference Da-Ae Primary Assembly

    Range
    6094091..6097683
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013892486.3 → XP_013747940.1  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta 1

    UniProtKB/TrEMBL
    A0A078GX24, A0A078HAW1
    Conserved Domains (1) summary
    PLN02251
    Location:2 → 566
    PLN02251; pyrophosphate-dependent phosphofructokinase
Nucleotide Protein
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