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rprd2b regulation of nuclear pre-mRNA domain containing 2b [ Clupea harengus (Atlantic herring) ]

Gene ID: 105912987, updated on 13-Mar-2024

Summary

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Gene symbol
rprd2b
Gene description
regulation of nuclear pre-mRNA domain containing 2b
See related
EnsemblRapid:ENSCHAG00020003776
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 11
Exon count:
10
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 11 NC_045162.1 (11715790..11737512, complement)

Chromosome 11 - NC_045162.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116222387 Neighboring gene threonyl-tRNA synthetase 2, mitochondrial Neighboring gene PRP3 pre-mRNA processing factor 3 homolog (yeast) Neighboring gene circadian-associated transcriptional repressor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045162.1 Chromosome 11 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II, holoenzyme IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
regulation of nuclear pre-mRNA domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045162.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    11715790..11737512 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042709194.1 → XP_042565128.1  regulation of nuclear pre-mRNA domain-containing protein 2

    UniProtKB/TrEMBL
    A0A8M1KRT4
    Related
    ENSCHAP00020007432.1, ENSCHAT00020008083.1
    Conserved Domains (3) summary
    PHA03247
    Location:707 → 1218
    PHA03247; large tegument protein UL36; Provisional
    pfam05283
    Location:399 → 454
    MGC-24; Multi-glycosylated core protein 24 (MGC-24), sialomucin
    cl02544
    Location:37 → 161
    VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily
Nucleotide Protein
Heading Accession and Version

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