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wsb1 WD repeat and SOCS box containing 1 [ Clupea harengus (Atlantic herring) ]

Gene ID: 105902819, updated on 8-Apr-2017

Summary

Gene symbol
wsb1
Gene description
WD repeat and SOCS box containing 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Orthologs

Genomic context

See wsb1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM96633v1 (GCF_000966335.1) Unplaced Scaffold NW_012221629.1 (715469..753663, complement)

NW_012221629.1Genomic Context describing neighboring genes Neighboring gene galectin 9 Neighboring gene kinase suppressor of ras 1 Neighboring gene phosphotyrosine interaction domain containing 1 Neighboring gene delta/notch like EGF repeat containing

Genomic regions, transcripts, and products

Genomic Sequence:
NW_012221629.1 Unplaced Scaffold Reference ASM96633v1 Primary Assembly

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
WD repeat and SOCS box-containing protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM96633v1 Primary Assembly

Genomic

  1. NW_012221629.1 Reference ASM96633v1 Primary Assembly

    Range
    715469..753663 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012830497.1XP_012685951.1  WD repeat and SOCS box-containing protein 1

    See identical proteins and their annotated locations for XP_012685951.1

    Conserved Domains (4) summary
    COG2319
    Location:38381
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:138381
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:137171
    7WD40; WD40 repeat [structural motif]
    cl02533
    Location:385424
    SOCS; SOCS (suppressors of cytokine signaling) box. The SOCS box is found in the C-terminal region of CIS/SOCS family proteins (in combination with a SH2 domain), ASBs (ankyrin repeat-containing proteins with a SOCS box), SSBs (SPRY domain-containing proteins ...
  2. XM_012830496.1XP_012685950.1  WD repeat and SOCS box-containing protein 1

    See identical proteins and their annotated locations for XP_012685950.1

    Conserved Domains (4) summary
    COG2319
    Location:38381
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:138381
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:137171
    7WD40; WD40 repeat [structural motif]
    cl02533
    Location:385424
    SOCS; SOCS (suppressors of cytokine signaling) box. The SOCS box is found in the C-terminal region of CIS/SOCS family proteins (in combination with a SH2 domain), ASBs (ankyrin repeat-containing proteins with a SOCS box), SSBs (SPRY domain-containing proteins ...
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