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LOC105799297 V-type proton ATPase subunit a1 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105799297, updated on 3-Apr-2024

Summary

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Gene symbol
LOC105799297
Gene description
V-type proton ATPase subunit a1
Locus tag
B456_006G119300
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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Location:
chromosome: 9
Exon count:
19
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 9 NC_068573.1 (35726844..35738942, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 6 NC_026934.1 (36905462..36917572, complement)

Chromosome 9 - NC_068573.1Genomic Context describing neighboring genes Neighboring gene NADH--cytochrome b5 reductase 1 Neighboring gene geranylgeranyl diphosphate reductase, chloroplastic Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 Neighboring gene arogenate dehydratase/prephenate dehydratase 2, chloroplastic Neighboring gene uncharacterized LOC128032477

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables proton-transporting ATPase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vacuolar acidification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of vacuolar proton-transporting V-type ATPase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of vacuolar proton-transporting V-type ATPase, V0 domain IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
V-type proton ATPase subunit a1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068573.1 Reference ASM2569854v1 Primary Assembly

    Range
    35726844..35738942 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012629766.2 → XP_012485220.1  V-type proton ATPase subunit a1 isoform X1

    See identical proteins and their annotated locations for XP_012485220.1

    UniProtKB/TrEMBL
    A0A0D2NQT9, A0A0D2RRL1
    Conserved Domains (2) summary
    COG1269
    Location:14 → 809
    NtpI; Archaeal/vacuolar-type H+-ATPase subunit I/STV1 [Energy production and conversion]
    pfam01496
    Location:37 → 809
    V_ATPase_I; V-type ATPase 116kDa subunit family

  2. XM_052620940.1 → XP_052476900.1  V-type proton ATPase subunit a1 isoform X1

    UniProtKB/TrEMBL
    A0A0D2NQT9

  3. XM_052620939.1 → XP_052476899.1  V-type proton ATPase subunit a1 isoform X1

    UniProtKB/TrEMBL
    A0A0D2NQT9

  4. XM_052620941.1 → XP_052476901.1  V-type proton ATPase subunit a1 isoform X2

Nucleotide Protein
Heading Accession and Version

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