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LOC105647074 transcription repressor KAN1 [ Jatropha curcas ]

Gene ID: 105647074, updated on 14-Dec-2023

Summary

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Gene symbol
LOC105647074
Gene description
transcription repressor KAN1
Locus tag
JCGZ_27045
Gene type
protein coding
RefSeq status
MODEL
Organism
Jatropha curcas
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
102 current RJC1_Hi-C (GCF_014843425.1) Unplaced Scaffold NW_023591593.1 (30763..40676, complement)
101 previous assembly JatCur_1.0 (GCF_000696525.1) Unplaced Scaffold NW_012125008.1 (114788..124948, complement)

NW_023591593.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in abaxial cell fate specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription repressor KAN1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Jatropha curcas Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference RJC1_Hi-C Primary Assembly

Genomic

  1. NW_023591593.1 Reference RJC1_Hi-C Primary Assembly

    Range
    30763..40676 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012233061.3 → XP_012088451.1  transcription repressor KAN1 isoform X2

    Conserved Domains (1) summary
    TIGR01557
    Location:205 → 258
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class

  2. XM_012233060.3 → XP_012088450.1  transcription repressor KAN1 isoform X1

    See identical proteins and their annotated locations for XP_012088450.1

    UniProtKB/TrEMBL
    A0A067JJF1
    Conserved Domains (1) summary
    TIGR01557
    Location:205 → 258
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
Nucleotide Protein
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