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B3GALT1-AS1 B3GALT1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105616981, updated on 10-Oct-2023

Summary

Official Symbol
B3GALT1-AS1provided by HGNC
Official Full Name
B3GALT1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40089
See related
Ensembl:ENSG00000235335 AllianceGenome:HGNC:40089
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in colon (RPKM 3.5), brain (RPKM 2.8) and 1 other tissue See more
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Genomic context

See B3GALT1-AS1 in Genome Data Viewer
Location:
2q24.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (167814774..167941144, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (168272618..168399031, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (168671284..168797654, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene beta-1,3-galactosyltransferase 1 Neighboring gene RNA, U7 small nuclear 148 pseudogene Neighboring gene CTAGE family member 14, pseudogene Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:168700657-168701624 Neighboring gene NANOG hESC enhancer GRCh37_chr2:168718058-168718586 Neighboring gene uncharacterized LOC124907903 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:168801351-168802550 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16730 Neighboring gene serine/threonine kinase 39 Neighboring gene NANOG hESC enhancer GRCh37_chr2:168920562-168921101 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12071 Neighboring gene NANOG hESC enhancer GRCh37_chr2:168972872-168973411 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:169067330-169068529 Neighboring gene uncharacterized LOC124906088 Neighboring gene PHF5A pseudogene 5

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_131227.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC016723, CA420028, CB158968
    Related
    ENST00000430546.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    167814774..167941144 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    168272618..168399031 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)