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LOC105379499 uncharacterized LOC105379499 [ Homo sapiens (human) ]

Gene ID: 105379499, updated on 29-Mar-2023

Summary

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Gene symbol
LOC105379499
Gene description
uncharacterized LOC105379499
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CH507-24F1.1; CH507-145C22.1; CH507-154B10.1; CH507-154B10.2
Expression
Ubiquitous expression in prostate (RPKM 1.5), skin (RPKM 0.9) and 25 other tissues See more
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Genomic context

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See LOC105379499 in Genome Data Viewer
Location:
21p12
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_03 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (6984227..6997801, complement)
RS_2023_03 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (2828936..2864393, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene telomeric repeat-binding factor 1-like Neighboring gene ribosome biogenesis protein SLX9 homolog Neighboring gene carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2-like Neighboring gene uncharacterized LOC102724843 Neighboring gene CTBP2 pseudogene 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    6984227..6997801 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007067797.1 RNA Sequence

  2. XR_001755120.3 RNA Sequence

  3. XR_951139.3 RNA Sequence

  4. XR_001755121.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    2828936..2864393 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007090016.1 RNA Sequence

  2. XR_007090015.1 RNA Sequence

  3. XR_007090014.1 RNA Sequence

  4. XR_007090017.1 RNA Sequence

  5. XR_007090013.1 RNA Sequence

  6. XR_007090012.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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