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LOC105379109 uncharacterized LOC105379109 [ Homo sapiens (human) ]

Gene ID: 105379109, updated on 25-Oct-2023

Summary

Gene symbol
LOC105379109
Gene description
uncharacterized LOC105379109
See related
Ensembl:ENSG00000251574
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.0) See more
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Genomic context

Location:
5q21.2
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (104629530..104773803, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (105133619..105277996, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene RNA, U1 small nuclear 140, pseudogene Neighboring gene ncRNA involved in NHEJ oncogenic ligation efficiency Neighboring gene Sharpr-MPRA regulatory region 14586 Neighboring gene RNA, 7SL, cytoplasmic 255, pseudogene Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:103652082-103653281 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:103707754-103708953 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:103739859-103740360 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:103740361-103740860 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:103787853-103788456 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:103787247-103787852 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_80648 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:103985884-103986480 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:104089973-104090787 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_80715 Neighboring gene RNA, U6 small nuclear 334, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:104287201-104287702 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:104287703-104288202 Neighboring gene RAB9B, member RAS oncogene family pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_188304.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022124, AC099520
  2. NR_188305.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022124, AC099520
  3. NR_188306.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022124, AC099520
    Related
    ENST00000659174.1
  4. NR_188307.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022124, AC099520
  5. NR_188308.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022124, AC099520
  6. NR_188309.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022124, AC099520
  7. NR_188310.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022124, AC099520
  8. NR_188311.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022124, AC099520
    Related
    ENST00000505824.6
  9. NR_188312.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC026733, AC099520
    Related
    ENST00000656667.1
  10. NR_188313.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC026733, AC099520
  11. NR_188314.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC099520
    Related
    ENST00000523434.6
  12. NR_188315.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC099520
  13. NR_188316.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC099520
    Related
    ENST00000653846.1
  14. NR_188317.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC099520
    Related
    ENST00000661290.1
  15. NR_188318.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC099520
    Related
    ENST00000660068.1
  16. NR_188319.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC099520
    Related
    ENST00000518276.2
  17. NR_188320.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC099520
    Related
    ENST00000669785.1
  18. NR_188321.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC099520
    Related
    ENST00000669636.1
  19. NR_188322.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC099520
    Related
    ENST00000659751.1
  20. NR_188323.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC099520
    Related
    ENST00000665963.1
  21. NR_188324.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC099520
    Related
    ENST00000651720.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    104629530..104773803 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    105133619..105277996 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)