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TMEM167B-DT TMEM167B divergent transcript [ Homo sapiens (human) ]

Gene ID: 105378892, updated on 10-Oct-2023

Summary

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Official Symbol
TMEM167B-DTprovided by HGNC
Official Full Name
TMEM167B divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55076
See related
AllianceGenome:HGNC:55076
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
1p13.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (109078292..109084750, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene RAN pseudogene 5 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:109609757-109610560 Neighboring gene TATA-box binding protein associated factor 13 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:109616882-109617868 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1433 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1434 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1435 Neighboring gene transmembrane protein 167B Neighboring gene NADH:ubiquinone oxidoreductase subunit B3 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:109641577-109642336 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:109642337-109643096 Neighboring gene small Cajal body-specific RNA 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000001.11 Chromosome 1 Reference GRCh38.p14 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    109078292..109084750 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_947688.3 RNA Sequence

  2. XR_007066295.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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