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LINC02609 long intergenic non-protein coding RNA 2609 [ Homo sapiens (human) ]

Gene ID: 105378853, updated on 10-Oct-2023

Summary

Official Symbol
LINC02609provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2609provided by HGNC
Primary source
HGNC:HGNC:27140
See related
Ensembl:ENSG00000233593 AllianceGenome:HGNC:27140
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in liver (RPKM 2.7), testis (RPKM 2.3) and 21 other tissues See more
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Genomic context

See LINC02609 in Genome Data Viewer
Location:
1p22.2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (90782984..90851650, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (90627369..90696134, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (91248541..91317207, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA, C/D box 3G Neighboring gene NANOG hESC enhancer GRCh37_chr1:91149838-91150358 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:91171602-91172396 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:91176541-91177109 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:91190371-91190926 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:91190927-91191482 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:91192039-91192594 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:91193268-91194089 Neighboring gene BarH like homeobox 2 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:91227242-91228098 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:91253233-91253482 Neighboring gene uncharacterized LOC124904217 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:91275093-91275704 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:91277119-91277260 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:91300317-91300956 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:91304224-91304748 Neighboring gene VISTA enhancer hs612 Neighboring gene long intergenic non-protein coding RNA 2788 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:91316240-91316740 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1063 Neighboring gene long intergenic non-protein coding RNA 1763 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:91356676-91357355 Neighboring gene phosphorylase kinase regulatory subunit alpha 1 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135038.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BJ993392, BJ993393, CB164346
  2. NR_147930.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC091614, AK022898, AL590094
    Related
    ENST00000606660.1
  3. NR_147931.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC091614, AL590094
    Related
    ENST00000443802.3
  4. NR_147932.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL590094, BC036441
    Related
    ENST00000455680.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    90782984..90851650 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    90627369..90696134 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_135039.1: Suppressed sequence

    Description
    NR_135039.1: This RefSeq was removed because currently there is insufficient support for the transcript.