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FAF1-AS1 FAF1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105378715, updated on 10-Dec-2024

Summary

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Official Symbol
FAF1-AS1provided by HGNC
Official Full Name
FAF1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40228
See related
Ensembl:ENSG00000225767 AllianceGenome:HGNC:40228
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See FAF1-AS1 in Genome Data Viewer
Location:
1p32.3
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (50441488..50471156)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (50321100..50350768)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:50883775-50884725 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:50884726-50885675 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:50886911-50887410 Neighboring gene uncharacterized LOC105378714 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 863 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:50892122-50893115 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:50893116-50894108 Neighboring gene NANOG hESC enhancer GRCh37_chr1:50918802-50919303 Neighboring gene DMRT like family A2 Neighboring gene MPRA-validated peak214 silencer Neighboring gene Fas associated factor 1 Neighboring gene VISTA enhancer hs194 Neighboring gene RNA, U6 small nuclear 1026, pseudogene Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:51069018-51070217 Neighboring gene NANOG hESC enhancer GRCh37_chr1:51124041-51124558 Neighboring gene VISTA enhancer hs200 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    50441488..50471156
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007066079.1 RNA Sequence

  2. XR_001737633.3 RNA Sequence

  3. XR_007066077.1 RNA Sequence

    Related
    ENST00000754100.1

  4. XR_001737632.3 RNA Sequence

  5. XR_007066078.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    50321100..50350768
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007070191.1 RNA Sequence

  2. XR_007070188.1 RNA Sequence

  3. XR_007070189.1 RNA Sequence

  4. XR_007070187.1 RNA Sequence

  5. XR_007070190.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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