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LINC01778 long intergenic non-protein coding RNA 1778 [ Homo sapiens (human) ]

Gene ID: 105378622, updated on 13-May-2022

Summary

Official Symbol
LINC01778provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1778provided by HGNC
Primary source
HGNC:HGNC:52568
See related
Ensembl:ENSG00000223382 AllianceGenome:HGNC:52568
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in adrenal (RPKM 1.2), fat (RPKM 0.3) and 11 other tissues See more
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Genomic context

See LINC01778 in Genome Data Viewer
Location:
1p35.2
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (30824652..30834284)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (30676975..30686619)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (31297499..31307131)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378621 Neighboring gene CRISPRi-validated cis-regulatory element chr1.4291 Neighboring gene Sharpr-MPRA regulatory region 4114 Neighboring gene Sharpr-MPRA regulatory region 1191 Neighboring gene RN7SK pseudogene 91

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146732.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI869071, AL137027, AL445235, BX113853
    Related
    ENST00000634587.2

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    30824652..30834284
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    30676975..30686619
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)