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LINC01409 long intergenic non-protein coding RNA 1409 [ Homo sapiens (human) ]

Gene ID: 105378580, updated on 29-Mar-2023

Summary

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Official Symbol
LINC01409provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1409provided by HGNC
Primary source
HGNC:HGNC:50701
See related
AllianceGenome:HGNC:50701
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 1.1), prostate (RPKM 0.6) and 24 other tissues See more
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Genomic context

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See LINC01409 in Genome Data Viewer
Location:
1p36.33
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_03 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (778758..787675)
RS_2023_03 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (205300..213723)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100288069 Neighboring gene capicua transcriptional repressor pseudogene 3 Neighboring gene RNA, U6 small nuclear 1199, pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:725666-726630 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:726662-727228 Neighboring gene uncharacterized LOC124903817

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    778758..787675
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007065319.1 RNA Sequence

  2. XR_007065320.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    205300..213723
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007069729.1 RNA Sequence

  2. XR_007069730.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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