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DUSP5-DT DUSP5 divergent transcript [ Homo sapiens (human) ]

Gene ID: 105378481, updated on 4-Mar-2025

Summary

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Official Symbol
DUSP5-DTprovided by HGNC
Official Full Name
DUSP5 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55154
See related
AllianceGenome:HGNC:55154
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See DUSP5-DT in Genome Data Viewer
Location:
10q25.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (110474342..110496482, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (111358145..111380291, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (112234100..112256240, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378482 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4020 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4021 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:112190742-112191347 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4022 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4023 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4024 Neighboring gene high mobility group box 3 pseudogene 5 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr10:112219715-112220914 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4028 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4027 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:112256187-112256710 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2815 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2816 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2817 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2818 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4029 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4030 Neighboring gene dual specificity phosphatase 5 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4031 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4032 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4033 Neighboring gene Sharpr-MPRA regulatory region 14569 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4034 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2819 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4035 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4036 Neighboring gene ribosomal protein L7 pseudogene 35

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187547.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL355512

  2. NR_187548.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL355512

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    110474342..110496482 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    111358145..111380291 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials