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ATOX1-AS1 ATOX1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105378235, updated on 21-Mar-2023

Summary

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Official Symbol
ATOX1-AS1provided by HGNC
Official Full Name
ATOX1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:55528
See related
AllianceGenome:HGNC:55528
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 1.4), bone marrow (RPKM 0.2) and 6 other tissues See more
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Genomic context

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See ATOX1-AS1 in Genome Data Viewer
Location:
5q33.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_03 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (151753080..151758360)
RS_2023_03 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (152292051..152297332)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 608 Neighboring gene Sharpr-MPRA regulatory regions 4972 and 759 Neighboring gene antioxidant 1 copper chaperone Neighboring gene ribosomal protein lateral stalk subunit P1 pseudogene 6 Neighboring gene uncharacterized LOC100652758 Neighboring gene Sharpr-MPRA regulatory region 5918

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Other Names

  • CTB-113P19.3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    151753080..151758360
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007059008.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    152292051..152297332
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007076029.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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