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SAP30-DT SAP30 divergent transcript [ Homo sapiens (human) ]

Gene ID: 105377540, updated on 28-Apr-2022

Summary

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Official Symbol
SAP30-DTprovided by HGNC
Official Full Name
SAP30 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:54424
See related
Ensembl:ENSG00000272870 AllianceGenome:HGNC:54424
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in ovary (RPKM 1.9), testis (RPKM 1.5) and 25 other tissues See more
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Genomic context

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See SAP30-DT in Genome Data Viewer
Location:
4q34.1
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (173363780..173370814, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (176703179..176710238, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124900813 Neighboring gene high mobility group box 2 Neighboring gene Sin3A associated protein 30 Neighboring gene uncharacterized LOC112268474 Neighboring gene stimulator of chondrogenesis 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The lncRNA ENST00000608794 acts as a competing endogenous RNA to regulate PDK4 expression by sponging miR-15b-5p in dexamethasone induced steatosis. Liu F, et al. Biochim Biophys Acta Mol Cell Biol Lipids, 2019 Oct. PMID 31330194

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    173363780..173370814 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_939463.4 RNA Sequence

    Related
    ENST00000609153.2

  2. XR_007058364.1 RNA Sequence

  3. XR_007058365.1 RNA Sequence

  4. XR_939462.3 RNA Sequence

    Related
    ENST00000666010.2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    176703179..176710238 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007075145.1 RNA Sequence

  2. XR_007075146.1 RNA Sequence

  3. XR_007075147.1 RNA Sequence

  4. XR_007075148.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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