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LOC105377489 uncharacterized LOC105377489 [ Homo sapiens (human) ]

Gene ID: 105377489, updated on 10-Dec-2024

Summary

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Gene symbol
LOC105377489
Gene description
uncharacterized LOC105377489
See related
Ensembl:ENSG00000251377
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105377489 in Genome Data Viewer
Location:
4q31.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (152179490..152182360, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (155502620..155505490, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:153021562-153022062 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:153022063-153022563 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:153022858-153024057 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:153027165-153028364 Neighboring gene long intergenic non-protein coding RNA 2273 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15750 Neighboring gene uncharacterized LOC124900800 Neighboring gene uncharacterized LOC105377490 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:153165015-153165201 Neighboring gene RNA, 7SL, cytoplasmic 446, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    152179490..152182360 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_939351.1 RNA Sequence

    Related
    ENST00000758596.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    155502620..155505490 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007075087.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials