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LINC02008 long intergenic non-protein coding RNA 2008 [ Homo sapiens (human) ]

Gene ID: 105377180, updated on 10-Oct-2023

Summary

Official Symbol
LINC02008provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2008provided by HGNC
Primary source
HGNC:HGNC:52844
See related
Ensembl:ENSG00000239440 AllianceGenome:HGNC:52844
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC02008 in Genome Data Viewer
Location:
3p12.2
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (81986142..82463675)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (82039234..82516594)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (82035293..82512826)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377179 Neighboring gene uncharacterized LOC124906199 Neighboring gene Sharpr-MPRA regulatory region 4090 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14541 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14542 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:82386328-82387022 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:82387023-82387717 Neighboring gene ribosomal protein L7a pseudogene 23 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:82510950-82512149 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:82555583-82556082 Neighboring gene MPRA-validated peak4728 silencer Neighboring gene cytochrome P450 family 51 subfamily A member 1 pseudogene 1 Neighboring gene uncharacterized LOC101927439

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_147146.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC031255
    Related
    ENST00000470263.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    81986142..82463675
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    82039234..82516594
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)