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LINC01678 long intergenic non-protein coding RNA 1678 [ Homo sapiens (human) ]

Gene ID: 105377138, updated on 25-Jan-2022

Summary

Official Symbol
LINC01678provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1678provided by HGNC
Primary source
HGNC:HGNC:52466
See related
AllianceGenome:HGNC:52466
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in spleen (RPKM 1.0), appendix (RPKM 0.6) and 23 other tissues See more
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Genomic context

See LINC01678 in Genome Data Viewer
Location:
21q22.3
Exon count:
2
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 21 NC_000021.9 (44158773..44159862, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (45578656..45579745, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 9823 Neighboring gene PWP2 small subunit processome component Neighboring gene glutamine amidotransferase class 1 domain containing 3 Neighboring gene uncharacterized LOC105377139 Neighboring gene uncharacterized LOC107983952 Neighboring gene uncharacterized LOC102725065

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146631.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP001055

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p13 Primary Assembly

    Range
    44158773..44159862 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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