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LOC105376805 uncharacterized LOC105376805 [ Homo sapiens (human) ]

Gene ID: 105376805, updated on 10-Dec-2024

Summary

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Gene symbol
LOC105376805
Gene description
uncharacterized LOC105376805
See related
Ensembl:ENSG00000238142
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in kidney (RPKM 5.6), fat (RPKM 5.4) and 25 other tissues See more
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Genomic context

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See LOC105376805 in Genome Data Viewer
Location:
1p36.13
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (16888538..16889666, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (16698966..16700095, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (17215033..17216161, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene putative protein FAM231BP Neighboring gene tRNA-Glu (anticodon TTC) 3-1 Neighboring gene long intergenic non-protein coding RNA 3126 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:17201146-17201709 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:17201710-17202272 Neighboring gene RNA, U1 small nuclear 5, pseudogene Neighboring gene uncharacterized LOC107985101 Neighboring gene tRNA-Asn (anticodon GTT) 4-1 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:17221837-17222770 Neighboring gene RNA, U1 small nuclear 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135056.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AI620898, BM923306, HY134640
    Related
    ENST00000790101.1

  2. NR_135057.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in the 3'-terminal exon compared to variant 1.
    Source sequence(s)
    BM923306, HY134640
    Related
    ENST00000790097.1

  3. NR_135058.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate 5'-terminal exon compared to variant 1.
    Source sequence(s)
    BC070363, BM923306, BX284668
    Related
    ENST00000457075.1

  4. NR_135059.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) uses an alternate 5'-terminal exon and an alternate splice site in the 3'-terminal exon, compared to variant 1.
    Source sequence(s)
    BM923306, BX115769, BX284668
    Related
    ENST00000790089.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    16888538..16889666 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791756.1 Reference GRCh38.p14 PATCHES

    Range
    1303691..1304819 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    16698966..16700095 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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