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LINC02699 long intergenic non-protein coding RNA 2699 [ Homo sapiens (human) ]

Gene ID: 105376596, updated on 28-Jan-2023

Summary

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Official Symbol
LINC02699provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2699provided by HGNC
Primary source
HGNC:HGNC:54213
See related
AllianceGenome:HGNC:54213
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02699 in Genome Data Viewer
Location:
11p14.3
Exon count:
14
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (25734751..25924451)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (25875193..26064800)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene V-type proton ATPase subunit G 1-like Neighboring gene ribosomal protein L36a pseudogene 40 Neighboring gene NEDD8 activating enzyme E1 subunit 1 pseudogene Neighboring gene anoctamin 3 Neighboring gene ANO3 antisense RNA 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183692.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090592

  2. NR_183693.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022253, AC090592, AC100770

  3. NR_183694.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013799, AC022253, AC100770

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    25734751..25924451
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_931132.4 RNA Sequence

  2. XR_931134.2 RNA Sequence

  3. XR_931135.3 RNA Sequence

  4. XR_931136.4 RNA Sequence

  5. XR_931133.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    25875193..26064800
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007081715.1 RNA Sequence

  2. XR_007081716.1 RNA Sequence

  3. XR_007081718.1 RNA Sequence

  4. XR_007081717.1 RNA Sequence

  5. XR_007081714.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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