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LOC105376429 uncharacterized LOC105376429 [ Homo sapiens (human) ]

Gene ID: 105376429, updated on 10-Dec-2024

Summary

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Gene symbol
LOC105376429
Gene description
uncharacterized LOC105376429
See related
Ensembl:ENSG00000236495
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105376429 in Genome Data Viewer
Location:
10p13
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (14652747..14660581)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (14666754..14674611)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902380 Neighboring gene MIR1265-FAM107B intergenic CAGE-defined T cell enhancer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:14561637-14562152 Neighboring gene uncharacterized LOC124902381 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3072 Neighboring gene family with sequence similarity 107 member B Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:14597390-14598109 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3073 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:14600759-14601636 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2160 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3074 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3075 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:14637528-14638028 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:14638029-14638529 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:14640925-14641108 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3076 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3077 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2161 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2162 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3078 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3079 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3080 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:14690664-14691863 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3081 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:14716743-14717329 Neighboring gene RNA, 5S ribosomal pseudogene 302 Neighboring gene ribosomal protein SA pseudogene 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    14652747..14660581
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_930691.4 RNA Sequence

    Related
    ENST00000647862.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    14666754..14674611
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007080710.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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