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LINC02476 long intergenic non-protein coding RNA 2476 [ Homo sapiens (human) ]

Gene ID: 105375475, updated on 23-Nov-2021

Summary

Official Symbol
LINC02476provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2476provided by HGNC
Primary source
HGNC:HGNC:53419
See related
Ensembl:ENSG00000225546
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LVCAT5; lnc-TSPAN12
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC02476 in Genome Data Viewer
Location:
7q31.31
Exon count:
8
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (119619430..119907375, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (119259484..119547429, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene general transcription factor IIIA pseudogene 6 Neighboring gene eukaryotic translation initiation factor 3 subunit I pseudogene Neighboring gene uncharacterized LOC107986840 Neighboring gene RNA, U1 small nuclear 29, pseudogene Neighboring gene uncharacterized LOC105375477

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_131960.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC073090, AC078848, AC091320
  2. NR_131961.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks two exons and contains an alternate 3' terminal exon, compared to variant 1.
    Source sequence(s)
    AC073090, AC078848
    Related
    ENST00000426413.2
  3. NR_131962.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks three exons and contains an alternate 3' terminal exon, compared to variant 1.
    Source sequence(s)
    AC073090, AC078848, AC099648
    Related
    ENST00000431071.5
  4. NR_131963.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks three exons and contains an alternate 3' terminal exon, compared to variant 1.
    Source sequence(s)
    AC073090, AC078848

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    119619430..119907375 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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