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LOC105374971 uncharacterized LOC105374971 [ Homo sapiens (human) ]

Gene ID: 105374971, updated on 10-Dec-2024

Summary

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Gene symbol
LOC105374971
Gene description
uncharacterized LOC105374971
See related
Ensembl:ENSG00000272168
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105374971 in Genome Data Viewer
Location:
6p22.3
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (22349218..22590314)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (22221620..22462733)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:22221433-22222281 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:22223143-22223644 Neighboring gene NGRN pseudogene 4 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:22313984-22314538 Neighboring gene prolactin Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:22441843-22443042 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:22443327-22443827 Neighboring gene MPRA-validated peak5731 silencer Neighboring gene HDGF like 1 Neighboring gene uncharacterized LOC105374973 Neighboring gene uncharacterized LOC102724736 Neighboring gene long intergenic non-protein coding RNA 3005

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    22349218..22590314
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001744024.2 RNA Sequence

  2. XR_001744023.2 RNA Sequence

    Related
    ENST00000846437.1

  3. XR_001744025.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    22221620..22462733
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007076615.1 RNA Sequence

  2. XR_007076614.1 RNA Sequence

  3. XR_007076616.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials