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LINC01830 long intergenic non-protein coding RNA 1830 [ Homo sapiens (human) ]

Gene ID: 105374322, updated on 17-Jun-2024

Summary

Official Symbol
LINC01830provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1830provided by HGNC
Primary source
HGNC:HGNC:52636
See related
Ensembl:ENSG00000228999 AllianceGenome:HGNC:52636
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01830 in Genome Data Viewer
Location:
2p24.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (22517939..22544736, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (22553672..22580471, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124905953 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:22451969-22452142 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:22547384-22547884 Neighboring gene NANOG hESC enhancer GRCh37_chr2:22582020-22582599 Neighboring gene RNA, 5S ribosomal pseudogene 87 Neighboring gene uncharacterized LOC107985857 Neighboring gene long intergenic non-protein coding RNA 1884 Neighboring gene NANOG hESC enhancer GRCh37_chr2:23014247-23014790 Neighboring gene RN7SK pseudogene 27 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:23168753-23169252 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr2:23169347-23170123 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:23192870-23193800 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:23207307-23207925 Neighboring gene uncharacterized LOC124908057

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187227.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC096561, AC096570
  2. NR_187228.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC096570
    Related
    ENST00000654338.1
  3. NR_187229.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC096570
    Related
    ENST00000669301.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    22517939..22544736 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    22553672..22580471 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)