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MECOM-AS1 MECOM antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105374205, updated on 10-Oct-2023

Summary

Official Symbol
MECOM-AS1provided by HGNC
Official Full Name
MECOM antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40368
See related
Ensembl:ENSG00000241479 AllianceGenome:HGNC:40368
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in esophagus (RPKM 1.4), stomach (RPKM 0.2) and 2 other tissues See more
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Genomic context

Location:
3q26.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (169447867..169477052)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (172231819..172261010)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (169165655..169194840)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene MDS1 and EVI1 complex locus Neighboring gene VISTA enhancer hs1433 Neighboring gene uncharacterized LOC124909454 Neighboring gene uncharacterized LOC105374206 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr3:169027108-169028307 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:169200343-169200843 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_66618 Neighboring gene ribosomal protein L22 pseudogene 1 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:169281185-169282384 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_66711 Neighboring gene uncharacterized LOC124906301 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr3:169378582-169379302

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134932.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC074033
    Related
    ENST00000480669.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    169447867..169477052
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    172231819..172261010
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)