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LINC02046 long intergenic non-protein coding RNA 2046 [ Homo sapiens (human) ]

Gene ID: 105374149, updated on 10-Oct-2023

Summary

Official Symbol
LINC02046provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2046provided by HGNC
Primary source
HGNC:HGNC:52886
See related
AllianceGenome:HGNC:52886
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC02046 in Genome Data Viewer
Location:
3q24
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (148280891..148399956)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (151036097..151155217)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (147998678..148117743)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 20 Neighboring gene long intergenic non-protein coding RNA 2045 Neighboring gene Sharpr-MPRA regulatory region 10294 Neighboring gene VISTA enhancer hs1115 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20676 Neighboring gene uncharacterized LOC105374148 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20677 Neighboring gene uncharacterized LOC105374147 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:148137167-148137950 Neighboring gene uncharacterized LOC105374150 Neighboring gene HNF1 motif-containing MPRA enhancer 244 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr3:148360892-148362091 Neighboring gene RPL38 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146712.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC121756, BE041827, DB447863

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    148280891..148399956
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    151036097..151155217
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)