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LINC01880 long intergenic non-protein coding RNA 1880 [ Homo sapiens (human) ]

Gene ID: 105373979, updated on 23-Nov-2021

Summary

Official Symbol
LINC01880provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1880provided by HGNC
Primary source
HGNC:HGNC:52699
See related
Ensembl:ENSG00000232002
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in heart (RPKM 1.1), adrenal (RPKM 0.1) and 8 other tissues See more
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Genomic context

See LINC01880 in Genome Data Viewer
Location:
2q37.3
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (242047684..242084138, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (242989835..243026289, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1237 Neighboring gene uncharacterized FLJ38379 Neighboring gene uncharacterized LOC105373980 Neighboring gene Sharpr-MPRA regulatory region 9157 Neighboring gene long intergenic non-protein coding RNA 1881 Neighboring gene septin 14 pseudogene 2 Neighboring gene capicua transcriptional repressor pseudogene 10

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146651.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC093642
    Related
    ENST00000446593.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    242047684..242084138 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_1

Genomic

  1. NT_187523.1 Reference GRCh38.p13 ALT_REF_LOCI_1

    Range
    91754..128208 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_2

Genomic

  1. NT_187647.1 Reference GRCh38.p13 ALT_REF_LOCI_2

    Range
    91394..127848 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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