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CAVIN2-AS1 CAVIN2 and TMEFF2 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105373813, updated on 21-Mar-2023

Summary

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Official Symbol
CAVIN2-AS1provided by HGNC
Official Full Name
CAVIN2 and TMEFF2 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40517
See related
AllianceGenome:HGNC:40517
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See CAVIN2-AS1 in Genome Data Viewer
Location:
2q32.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_03 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (192028279..192063829)
RS_2023_03 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (192516865..192545516)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 5853 Neighboring gene DNAJB1 pseudogene 1 Neighboring gene transmembrane protein with EGF like and two follistatin like domains 2 Neighboring gene Sharpr-MPRA regulatory region 3165 Neighboring gene ribosomal protein S17 pseudogene 8 Neighboring gene PCGEM1 prostate-specific transcript

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Serum deprivation response functions as a tumor suppressor gene in papillary thyroid cancer. Wang QX, et al. Clin Genet, 2019 Nov. PMID 31334828
  2. Genome-wide association with diabetes-related traits in the Framingham Heart Study. Meigs JB, et al. BMC Med Genet, 2007 Sep 19. PMID 17903298, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Clone Names

  • AC098617.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    192028279..192063829
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_923723.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    192516865..192545516
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007071687.1 RNA Sequence

  2. XR_007071688.1 RNA Sequence

  3. XR_007071684.1 RNA Sequence

  4. XR_007071685.1 RNA Sequence

  5. XR_007071686.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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