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SOCAR serous ovarian cancer associated RNA [ Homo sapiens (human) ]

Gene ID: 105373557, updated on 21-Mar-2023

Summary

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Official Symbol
SOCARprovided by HGNC
Official Full Name
serous ovarian cancer associated RNAprovided by HGNC
Primary source
HGNC:HGNC:54421
See related
AllianceGenome:HGNC:54421
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in bone marrow (RPKM 1.2), lymph node (RPKM 0.9) and 13 other tissues See more
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Genomic context

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See SOCAR in Genome Data Viewer
Location:
2q13
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_03 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (111447505..111510994)
RS_2023_03 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (111907395..111936760)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene MIR4435-2 host gene Neighboring gene microRNA 4435-2 Neighboring gene platelet activating factor acetylhydrolase 1b regulatory subunit 1 pseudogene 2 Neighboring gene uncharacterized LOC124906065 Neighboring gene uncharacterized LOC124906066 Neighboring gene DBF4 zinc finger pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The clinical significance and biological function of lncRNA SOCAR in serous ovarian carcinoma. Guo Q, et al. Gene, 2019 Sep 10. PMID 31299360

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Clone Names

  • AC017002.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    111447505..111510994
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007087183.1 RNA Sequence

  2. XR_001739635.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    111907395..111936760
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007072390.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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