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LINC01643 long intergenic non-protein coding RNA 1643 [ Homo sapiens (human) ]

Gene ID: 105373010, updated on 28-Apr-2022

Summary

Official Symbol
LINC01643provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1643provided by HGNC
Primary source
HGNC:HGNC:52430
See related
Ensembl:ENSG00000236052 AllianceGenome:HGNC:52430
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LL22NC03-86D4.1
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01643 in Genome Data Viewer
Location:
22q12.3
Exon count:
13
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (34017426..34218796)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (34474762..34676540)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene LARGE xylosyl- and glucuronyltransferase 1 Neighboring gene Sharpr-MPRA regulatory region 8125 Neighboring gene LARGE1 antisense RNA 1 Neighboring gene uncharacterized LL22NC03-13G6.2 Neighboring gene uncharacterized LOC124905108 Neighboring gene uncharacterized LOC105373012

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    34017426..34218796
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007068079.1 RNA Sequence

    Related
    ENST00000652942.1
  2. XR_938197.3 RNA Sequence

    Related
    ENST00000655455.1
  3. XR_007068076.1 RNA Sequence

    Related
    ENST00000656434.1
  4. XR_007068077.1 RNA Sequence

    Related
    ENST00000669802.1
  5. XR_938196.3 RNA Sequence

  6. XR_007068080.1 RNA Sequence

    Related
    ENST00000664028.1
  7. XR_938189.3 RNA Sequence

  8. XR_938190.3 RNA Sequence

  9. XR_938191.3 RNA Sequence

  10. XR_938192.3 RNA Sequence

  11. XR_007068073.1 RNA Sequence

  12. XR_007068075.1 RNA Sequence

    Related
    ENST00000657115.1
  13. XR_007068074.1 RNA Sequence

    Related
    ENST00000658055.1
  14. XR_938199.3 RNA Sequence

  15. XR_007068081.1 RNA Sequence

    Related
    ENST00000669488.1
  16. XR_007068078.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    34474762..34676540
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007090617.1 RNA Sequence

  2. XR_007090614.1 RNA Sequence

  3. XR_007090615.1 RNA Sequence

  4. XR_007090616.1 RNA Sequence

  5. XR_007090610.1 RNA Sequence

  6. XR_007090619.1 RNA Sequence

  7. XR_007090611.1 RNA Sequence

  8. XR_007090605.1 RNA Sequence

  9. XR_007090618.1 RNA Sequence

  10. XR_007090604.1 RNA Sequence

  11. XR_007090603.1 RNA Sequence

  12. XR_007090612.1 RNA Sequence

  13. XR_007090613.1 RNA Sequence

  14. XR_007090606.1 RNA Sequence

  15. XR_007090607.1 RNA Sequence

  16. XR_007090609.1 RNA Sequence

  17. XR_007090608.1 RNA Sequence