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ABR-AS1 ABR antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105371479, updated on 29-Mar-2023

Summary

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Official Symbol
ABR-AS1provided by HGNC
Official Full Name
ABR antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:55674
See related
AllianceGenome:HGNC:55674
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See ABR-AS1 in Genome Data Viewer
Location:
17p13.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_03 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (1181627..1190159)
RS_2023_03 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (1069475..1079253)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene ABR activator of RhoGEF and GTPase Neighboring gene mitochondrial ribosomal protein L14 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:1083316-1084082 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:1119641-1120638 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:1123483-1123982

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Clone Names

  • AC016292.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    1181627..1190159
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_934139.3 RNA Sequence

  2. XR_934138.3 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187613.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    224848..234631
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_951947.3 RNA Sequence

  2. XR_951946.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    1069475..1079253
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007087822.1 RNA Sequence

  2. XR_007087821.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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