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CPHXL cytoplasmic polyadenylated homeobox like [ Homo sapiens (human) ]

Gene ID: 105371346, updated on 5-Jan-2022

Summary

Official Symbol
CPHXLprovided by HGNC
Official Full Name
cytoplasmic polyadenylated homeobox likeprovided by HGNC
Primary source
HGNC:HGNC:51815
See related
Ensembl:ENSG00000283755 MIM:618700
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CPHXL1
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Nov 2021]
Orthologs
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Genomic context

See CPHXL in Genome Data Viewer
Location:
16q23.1
Exon count:
3
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 16 NC_000016.10 (75714131..75726490, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (75748029..75760388, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene RNA, 7SL, cytoplasmic 520, pseudogene Neighboring gene double homeobox B Neighboring gene ATP synthase peripheral stalk-membrane subunit b pseudogene 7 Neighboring gene uncharacterized LOC105371348 Neighboring gene uncharacterized LOC105371347 Neighboring gene RNA, 5S ribosomal pseudogene 430

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Homology

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
cytoplasmic polyadenylated homeobox-like
Names
cytoplasmic polyadenylated homeobox 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001355613.1NP_001342542.1  cytoplasmic polyadenylated homeobox-like

    Status: VALIDATED

    Source sequence(s)
    AC009122, AC025287, LN651082, LN651083
    Consensus CDS
    CCDS86543.1
    Related
    ENSP00000491599.1, ENST00000640559.2
    Conserved Domains (1) summary
    smart00389
    Location:2882
    HOX; Homeodomain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p13 Primary Assembly

    Range
    75714131..75726490 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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