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SNRPF-DT SNRPF divergent transcript [ Homo sapiens (human) ]

Gene ID: 105369921, updated on 23-Nov-2021

Summary

Official Symbol
SNRPF-DTprovided by HGNC
Official Full Name
SNRPF divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55452
See related
Ensembl:ENSG00000258343
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See SNRPF-DT in Genome Data Viewer
Location:
12q22-q23.1
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 12 NC_000012.12 (95795345..95858839, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (96189123..96252617, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene netrin 4 Neighboring gene uncharacterized LOC105369919 Neighboring gene RNA, U6 small nuclear 247, pseudogene Neighboring gene long intergenic non-protein coding RNA 2410 Neighboring gene small nuclear ribonucleoprotein polypeptide F Neighboring gene coiled-coil domain containing 38

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135014.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    DB454575
    Related
    ENST00000553194.1
  2. NR_135015.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks two exons and contains an alternate 3' exon and is shorter than variant 1.
    Source sequence(s)
    AA884114, AI829734, BX107766, DB454575
    Related
    ENST00000551893.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p13 Primary Assembly

    Range
    95795345..95858839 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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