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LOC105369595 uncharacterized LOC105369595 [ Homo sapiens (human) ]

Gene ID: 105369595, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105369595
Gene description
uncharacterized LOC105369595
See related
Ensembl:ENSG00000256020
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
12p13.33
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (585698..586486, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (581683..582472, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (694864..695652, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene beta-1,4-N-acetyl-galactosaminyltransferase 3 Neighboring gene uncharacterized LOC124902853 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:610726-611441 Neighboring gene uncharacterized LOC124902852 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:618531-619104 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:619948-620594 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:643601-644100 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:647445-648174 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:648175-648904 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:651093-651821 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:651822-652550 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:655449-655983 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:671915-672416 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:674581-675082 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:675083-675582 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:681299-681927 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:685261-685762 Neighboring gene Sharpr-MPRA regulatory region 2537 Neighboring gene ninjurin 2 Neighboring gene RNA, U7 small nuclear 103 pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:717809-718326 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:718327-718843 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:719097-719598 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:732135-732879 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:732880-733623 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4102 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4103 Neighboring gene NINJ2 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5779 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5780 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5781 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4104 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4105 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:754531-755730

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and analysis of 280,000 human expressed sequence tags. Hillier LD, et al. Genome Res, 1996 Sep. PMID 8889549

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134624.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA888201, AC006205, T68370
    Related
    ENST00000538943.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    585698..586486 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    581683..582472 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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