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CLDN14-AS1 CLDN14 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105369301, updated on 21-Mar-2023

Summary

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Official Symbol
CLDN14-AS1provided by HGNC
Official Full Name
CLDN14 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:55953
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PTAR
Expression
Low expression observed in reference dataset See more
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Genomic context

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See CLDN14-AS1 in Genome Data Viewer
Location:
21q22.13
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_03 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (36430325..36498526)
RS_2023_03 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (34812904..34880646)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene MORC family CW-type zinc finger 3 Neighboring gene ATP synthase membrane subunit f pseudogene 1 Neighboring gene chromatin assembly factor 1 subunit B Neighboring gene claudin 14 Neighboring gene proteasome 26S subunit, non-ATPase 4 pseudogene 1 Neighboring gene uncharacterized LOC105369308 Neighboring gene uncharacterized LOC107985492 Neighboring gene SIM bHLH transcription factor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. LncRNA PTAR promotes EMT and invasion-metastasis in serous ovarian cancer by competitively binding miR-101-3p to regulate ZEB1 expression. Liang H, et al. Mol Cancer, 2018 Aug 11. PMID 30098599, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Other Names

  • pro-transition associated RNA

Clone Names

  • AP000695.4, AP000695.6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183529.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000694, AP000695

  2. NR_183530.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000694, AP000695

  3. NR_183531.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000694, AP000695

  4. NR_183532.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000694, AP000695

  5. NR_183533.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000694

  6. NR_183534.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000694

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    36430325..36498526
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    34812904..34880646
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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