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LOC105330510 proto-oncogene tyrosine-protein kinase receptor Ret [ Crassostrea gigas (Pacific oyster) ]

Gene ID: 105330510, updated on 11-Apr-2024

Summary

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Gene symbol
LOC105330510
Gene description
proto-oncogene tyrosine-protein kinase receptor Ret
Locus tag
CGI_10015664
See related
EnsemblRapid:G2961
Gene type
protein coding
RefSeq status
MODEL
Organism
Crassostrea gigas
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Crassostrea
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Genomic context

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Location:
chromosome: 10
Exon count:
21
Annotation release Status Assembly LG Location
102 current cgigas_uk_roslin_v1 (GCF_902806645.1) 10 NC_047568.1 (46667101..46697009)
101 previous assembly oyster_v9 (GCF_000297895.1) Unplaced Scaffold NW_011935464.1 (132088..162840, complement)

Linkage Group 10 - NC_047568.1Genomic Context describing neighboring genes Neighboring gene cadherin-99C-like Neighboring gene cadherin-23-like Neighboring gene mitochondrial thiamine pyrophosphate carrier Neighboring gene QRFP-like peptide receptor Neighboring gene nuclear protein localization protein 4 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane receptor protein tyrosine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
proto-oncogene tyrosine-protein kinase receptor Ret; uncharacterized protein LOC105330510

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Crassostrea gigas Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference cgigas_uk_roslin_v1

Genomic

  1. NC_047568.1 Reference cgigas_uk_roslin_v1

    Range
    46667101..46697009
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034458724.1 → XP_034314615.1  proto-oncogene tyrosine-protein kinase receptor Ret isoform X4

    UniProtKB/TrEMBL
    A0A8W8LU32
    Conserved Domains (2) summary
    smart00112
    Location:185 → 248
    CA; Cadherin repeats
    cl21453
    Location:723 → 1016
    PKc_like; Protein Kinases, catalytic domain

  2. XM_034458722.1 → XP_034314613.1  proto-oncogene tyrosine-protein kinase receptor Ret isoform X2

    UniProtKB/TrEMBL
    A0A8W8LU32
    Conserved Domains (2) summary
    smart00112
    Location:185 → 248
    CA; Cadherin repeats
    cl21453
    Location:727 → 1020
    PKc_like; Protein Kinases, catalytic domain

  3. XM_034458721.1 → XP_034314612.1  proto-oncogene tyrosine-protein kinase receptor Ret isoform X1

    UniProtKB/TrEMBL
    A0A8W8LU32
    Conserved Domains (2) summary
    smart00112
    Location:185 → 248
    CA; Cadherin repeats
    cl21453
    Location:728 → 1021
    PKc_like; Protein Kinases, catalytic domain

  4. XM_034458723.1 → XP_034314614.1  uncharacterized protein LOC105330510 isoform X3

    UniProtKB/TrEMBL
    A0A8W8LT93, A0A8W8LU32
    Related
    G2961, G2961.1
    Conserved Domains (2) summary
    smart00112
    Location:185 → 248
    CA; Cadherin repeats
    cl21453
    Location:728 → 1021
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
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