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LOC105328430 uncharacterized LOC105328430 [ Crassostrea gigas (Pacific oyster) ]

Gene ID: 105328430, updated on 14-Dec-2023

Summary

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Gene symbol
LOC105328430
Gene description
uncharacterized LOC105328430
Locus tag
CGI_10028588
See related
EnsemblRapid:G19630
Gene type
protein coding
RefSeq status
MODEL
Organism
Crassostrea gigas
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Crassostrea
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Genomic context

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Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly LG Location
102 current cgigas_uk_roslin_v1 (GCF_902806645.1) 5 NC_047563.1 (62637641..62645857, complement)
101 previous assembly oyster_v9 (GCF_000297895.1) Unplaced Scaffold NW_011935256.1 (137913..145997)

Linkage Group 5 - NC_047563.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117691580 Neighboring gene putative nuclease HARBI1 Neighboring gene uncharacterized LOC105328553 Neighboring gene uncharacterized LOC117691581 Neighboring gene uncharacterized LOC105343600 Neighboring gene E3 ubiquitin-protein ligase Midline-1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables MAP kinase tyrosine/serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein tyrosine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of MAPK cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC105328430
Names
Dual specificity protein phosphatase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Crassostrea gigas Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference cgigas_uk_roslin_v1

Genomic

  1. NC_047563.1 Reference cgigas_uk_roslin_v1

    Range
    62637641..62645857 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011429294.3 → XP_011427596.1  uncharacterized protein LOC105328430

    See identical proteins and their annotated locations for XP_011427596.1

    UniProtKB/TrEMBL
    A0A8W8JJ20, K1RB41
    Related
    G19630, G19630, G19630.1, G19630.2
    Conserved Domains (1) summary
    cl21483
    Location:299 → 450
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases