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Gm40289 predicted gene, 40289 [ Mus musculus (house mouse) ]

Gene ID: 105244731, updated on 25-Jan-2022

Summary

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Official Symbol
Gm40289provided by MGI
Official Full Name
predicted gene, 40289provided by MGI
Primary source
MGI:MGI:5623174
See related
AllianceGenome:MGI:5623174
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm42505
Expression
Restricted expression toward testis adult (RPKM 2.3) See more
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Genomic context

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See Gm40289 in Genome Data Viewer
Location:
5 B3; 5
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (38129262..38145082)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (37971918..37987738)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 54328 Neighboring gene VISTA enhancer mm429 Neighboring gene syntaxin 18 Neighboring gene VISTA enhancer mm1165 Neighboring gene neuron specific gene family member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    38129262..38145082
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_868370.1 RNA Sequence

  2. XR_868367.2 RNA Sequence

  3. XR_868368.2 RNA Sequence

  4. XR_868369.4 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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