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Hoxaas2 Hoxa cluster antisense RNA 2 [ Mus musculus (house mouse) ]

Gene ID: 105242657, updated on 8-Feb-2024

Summary

Official Symbol
Hoxaas2provided by MGI
Official Full Name
Hoxa cluster antisense RNA 2provided by MGI
Primary source
MGI:MGI:1913890
See related
Ensembl:ENSMUSG00000056445 AllianceGenome:MGI:1913890
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2810043O09Rik; 5730446D14Rik
Summary
Is expressed in medulla oblongata alar plate mantle layer; medulla oblongata basal plate mantle layer; and pons mantle layer. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in CNS E14 (RPKM 2.1), CNS E11.5 (RPKM 2.0) and 20 other tissues See more
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Genomic context

See Hoxaas2 in Genome Data Viewer
Location:
6 B3; 6 25.4 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (52142654..52146431)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (52165674..52169451)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene Hoxa transcript antisense RNA, myeloid-specific 2 Neighboring gene Hoxa transcript antisense RNA, myeloid-specific 1 Neighboring gene homeobox A2 Neighboring gene homeobox A3 Neighboring gene RIKEN cDNA 5730596B20 gene Neighboring gene predicted gene 15050 Neighboring gene predicted gene, 57749

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Clone Names

  • MGC106080

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_131182.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC091106, AK012902
    Related
    ENSMUST00000155922.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    52142654..52146431
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)