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LOC105030446 alpha-amylase 1 [ Esox lucius (northern pike) ]

Gene ID: 105030446, updated on 14-Dec-2023

Summary

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Gene symbol
LOC105030446
Gene description
alpha-amylase 1
See related
EnsemblRapid:ENSELUG00000006012
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
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Genomic context

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Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 3 NC_047571.1 (32375266..32381041)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG03 NC_025970.4 (4250862..4256592, complement)

Chromosome 3 - NC_047571.1Genomic Context describing neighboring genes Neighboring gene noelin-3-like Neighboring gene collagen alpha-1(XI) chain-like Neighboring gene netrin-G1 Neighboring gene vav 3 guanine nucleotide exchange factor b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-amylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cation binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-amylase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047571.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    32375266..32381041
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010904319.5 → XP_010902621.1  alpha-amylase 1

    UniProtKB/TrEMBL
    A0A6Q2XB97
    Related
    ENSELUP00000004907.2, ENSELUT00000011525.3
    Conserved Domains (3) summary
    cd11317
    Location:28 → 411
    AmyAc_bac_euk_AmyA; Alpha amylase catalytic domain found in bacterial and eukaryotic Alpha amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)
    smart00632
    Location:418 → 505
    Aamy_C; Aamy_C domain
    COG0366
    Location:54 → 318
    AmyA; Glycosidase [Carbohydrate transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases