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Lratd1 LRAT domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 105005, updated on 5-Mar-2024

Summary

Official Symbol
Lratd1provided by MGI
Official Full Name
LRAT domain containing 1provided by MGI
Primary source
MGI:MGI:2145011
See related
Ensembl:ENSMUSG00000020607 AllianceGenome:MGI:2145011
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Nse1; Fam84a; 2310003N02Rik; 4731402F03Rik
Summary
Predicted to be involved in cell morphogenesis and cell motility. Predicted to be located in cytoplasm. Is expressed in cortical plate; nasal cavity respiratory epithelium; submandibular gland primordium; urethra; and vibrissa. Orthologous to human LRATD1 (LRAT domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in ovary adult (RPKM 21.9), small intestine adult (RPKM 17.0) and 19 other tissues See more
Orthologs
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Genomic context

See Lratd1 in Genome Data Viewer
Location:
12 A1.1; 12 6.93 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (14197599..14202039, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (14147598..14152038, complement)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene mortality factor 4 like 1 pseudogene Neighboring gene pleckstrin homology domain containing, family G (with RhoGef domain) member 1 pseudogene Neighboring gene methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like pseudogene Neighboring gene STARR-seq mESC enhancer starr_31600 Neighboring gene STARR-seq mESC enhancer starr_31601 Neighboring gene STARR-seq mESC enhancer starr_31602 Neighboring gene predicted gene, 36007 Neighboring gene predicted gene 16497 Neighboring gene predicted gene, 40840

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in cell morphogenesis IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in cell morphogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in cell motility IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in cell motility ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
protein LRATD1
Names
family with sequence similarity 84, member A
protein FAM84A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_029007.2NP_083283.2  protein LRATD1

    See identical proteins and their annotated locations for NP_083283.2

    Status: PROVISIONAL

    Source sequence(s)
    BC005488
    Consensus CDS
    CCDS25820.1
    UniProtKB/Swiss-Prot
    Q99K34, Q9D650
    UniProtKB/TrEMBL
    A0A0R4J012
    Related
    ENSMUSP00000020926.7, ENSMUST00000020926.8
    Conserved Domains (1) summary
    cl21534
    Location:143223
    NLPC_P60; NlpC/P60 family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    14197599..14202039 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)