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sod1 superoxide dismutase 1, soluble [ Larimichthys crocea (large yellow croaker) ]

Gene ID: 104923808, updated on 12-Mar-2024

Summary

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Gene symbol
sod1
Gene description
superoxide dismutase 1, soluble
Locus tag
EH28_08432
See related
Ensembl:ENSLCRG00005006676
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Larimichthys crocea
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Sciaenidae; Larimichthys
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: XXII
Exon count:
5
Annotation release Status Assembly Chr Location
102 current L_crocea_2.0 (GCF_000972845.2) XXII NC_040032.1 (7120328..7123474, complement)
101 previous assembly L_crocea_1.0 (GCF_000972845.1) Unplaced Scaffold NW_017609046.1 (557093..560306)

Chromosome XXII - NC_040032.1Genomic Context describing neighboring genes Neighboring gene glutamate receptor, ionotropic, kainate 1a Neighboring gene T-lymphoma invasion and metastasis-inducing protein 1 Neighboring gene SR-related CTD-associated factor 4a Neighboring gene hormonally up-regulated Neu-associated kinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and analysis of icCu/Zn-SOD, Mn-SOD and ecCu/Zn-SOD in superoxide dismutase multigene family of Pseudosciaena crocea. Liu H, et al. Fish Shellfish Immunol, 2015 Apr. PMID 25652289

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables superoxide dismutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in removal of superoxide radicals IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
superoxide dismutase [Cu-Zn]
Names
intracellular Cu-Zn superoxide dismutase
NP_001290289.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001303360.1 → NP_001290289.1  superoxide dismutase [Cu-Zn]

    See identical proteins and their annotated locations for NP_001290289.1

    Status: PROVISIONAL

    Source sequence(s)
    KJ908287
    UniProtKB/TrEMBL
    A0A077DB40
    Related
    ENSLCRP00005015899.1, ENSLCRT00005016243.1
    Conserved Domains (1) summary
    pfam00080
    Location:12 → 150
    Sod_Cu; Copper/zinc superoxide dismutase (SODC)

RefSeqs of Annotated Genomes: Larimichthys crocea Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference L_crocea_2.0 Primary Assembly

Genomic

  1. NC_040032.1 Reference L_crocea_2.0 Primary Assembly

    Range
    7120328..7123474 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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