Format

Send to:

Choose Destination

Sptssa serine palmitoyltransferase, small subunit A [ Mus musculus (house mouse) ]

Gene ID: 104725, updated on 29-Jan-2021

Summary

Official Symbol
Sptssaprovided by MGI
Official Full Name
serine palmitoyltransferase, small subunit Aprovided by MGI
Primary source
MGI:MGI:1913399
See related
Ensembl:ENSMUSG00000044408
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ssspta; AA407909; AA409588; AU041967; 1110002B05Rik
Expression
Ubiquitous expression in duodenum adult (RPKM 80.7), adrenal adult (RPKM 58.1) and 28 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Sptssa in Genome Data Viewer
Location:
12; 12 C1
Exon count:
2
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (54692159..54703357, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (54645374..54656572, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (55746361..55757559, complement)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 40425 Neighboring gene ribosomal protein L13 pseudogene Neighboring gene microRNA 1892 Neighboring gene predicted gene, 40884 Neighboring gene E2F-associated phosphoprotein Neighboring gene predicted gene, 36262

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
contributes_to serine C-palmitoyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
serine C-palmitoyltransferase activity ISO
Inferred from Sequence Orthology
more info
PubMed 
contributes_to serine C-palmitoyltransferase activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
ceramide biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ceramide biosynthetic process ISO
Inferred from Sequence Orthology
more info
PubMed 
lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 
protein localization ISO
Inferred from Sequence Orthology
more info
 
sphingolipid metabolic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
serine C-palmitoyltransferase complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
serine C-palmitoyltransferase complex ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
serine palmitoyltransferase small subunit A
Names
small subunit of serine palmitoyltransferase A

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_134054.2NP_598815.2  serine palmitoyltransferase small subunit A

    See identical proteins and their annotated locations for NP_598815.2

    Status: VALIDATED

    Source sequence(s)
    AK003171, BG091867, BY072251
    Consensus CDS
    CCDS36445.1
    UniProtKB/Swiss-Prot
    Q8R207
    Related
    ENSMUSP00000053671.6, ENSMUST00000056228.7
    Conserved Domains (1) summary
    pfam11779
    Location:1063
    SPT_ssu-like; Small subunit of serine palmitoyltransferase-like

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    54692159..54703357 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center