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PUF60 poly(U) binding splicing factor 60 [ Rhinopithecus roxellana (golden snub-nosed monkey) ]

Gene ID: 104671696, updated on 12-Mar-2024

Summary

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Gene symbol
PUF60
Gene description
poly(U) binding splicing factor 60
See related
Ensembl:ENSRROG00000029360
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinopithecus roxellana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Rhinopithecus
Orthologs
human mouse all
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Genomic context

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See PUF60 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
12
Annotation release Status Assembly Chr Location
101 current ASM756505v1 (GCF_007565055.1) 17 NC_044565.1 (5126731..5139567)
100 previous assembly Rrox_v1 (GCF_000769185.1) Unplaced Scaffold NW_010817467.1 (1229549..1242362)

Chromosome 17 - NC_044565.1Genomic Context describing neighboring genes Neighboring gene epiplakin 1 Neighboring gene nuclear receptor binding protein 2 Neighboring gene scribble planar cell polarity protein Neighboring gene uncharacterized LOC115894237 Neighboring gene IQ motif and ankyrin repeat containing 1 Neighboring gene UPF0454 protein C12orf49 homolog pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA splice site recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
poly(U)-binding-splicing factor PUF60

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhinopithecus roxellana Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM756505v1 Primary Assembly

Genomic

  1. NC_044565.1 Reference ASM756505v1 Primary Assembly

    Range
    5126731..5139567
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010375285.2 → XP_010373587.1  poly(U)-binding-splicing factor PUF60 isoform X1

    See identical proteins and their annotated locations for XP_010373587.1

    UniProtKB/TrEMBL
    A0A2K6P057, A0A2K6P063
    Related
    ENSRROP00000009912.1
    Conserved Domains (1) summary
    TIGR01645
    Location:7 → 559
    half-pint; poly-U binding splicing factor, half-pint family

  2. XM_010375287.2 → XP_010373589.1  poly(U)-binding-splicing factor PUF60 isoform X3

    See identical proteins and their annotated locations for XP_010373589.1

    UniProtKB/TrEMBL
    A0A2K6P055, A0A2K6P063
    Related
    ENSRROP00000009913.1
    Conserved Domains (1) summary
    TIGR01645
    Location:7 → 542
    half-pint; poly-U binding splicing factor, half-pint family

  3. XM_010375289.1 → XP_010373591.1  poly(U)-binding-splicing factor PUF60 isoform X5

    See identical proteins and their annotated locations for XP_010373591.1

    UniProtKB/TrEMBL
    A0A2K6P054, A0A2K6P063
    Related
    ENSRROP00000009914.1, ENSRROT00000034008.1
    Conserved Domains (1) summary
    TIGR01645
    Location:9 → 530
    half-pint; poly-U binding splicing factor, half-pint family

  4. XM_010375288.2 → XP_010373590.1  poly(U)-binding-splicing factor PUF60 isoform X4

    See identical proteins and their annotated locations for XP_010373590.1

    UniProtKB/TrEMBL
    A0A2K6P063
    Conserved Domains (1) summary
    TIGR01645
    Location:9 → 541
    half-pint; poly-U binding splicing factor, half-pint family

  5. XM_010375290.2 → XP_010373592.1  poly(U)-binding-splicing factor PUF60 isoform X6

    See identical proteins and their annotated locations for XP_010373592.1

    UniProtKB/TrEMBL
    A0A2K6P063
    Conserved Domains (1) summary
    TIGR01645
    Location:9 → 513
    half-pint; poly-U binding splicing factor, half-pint family

  6. XM_010375286.2 → XP_010373588.1  poly(U)-binding-splicing factor PUF60 isoform X2

    See identical proteins and their annotated locations for XP_010373588.1

    UniProtKB/TrEMBL
    A0A2K6P063
    Conserved Domains (1) summary
    TIGR01645
    Location:9 → 558
    half-pint; poly-U binding splicing factor, half-pint family
Nucleotide Protein
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