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HDAC4 histone deacetylase 4 [ Rhinopithecus roxellana (golden snub-nosed monkey) ]

Gene ID: 104660448, updated on 12-Mar-2024

Summary

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Gene symbol
HDAC4
Gene description
histone deacetylase 4
See related
Ensembl:ENSRROG00000035950
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinopithecus roxellana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Rhinopithecus
Orthologs
human mouse all
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Genomic context

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See HDAC4 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
31
Annotation release Status Assembly Chr Location
101 current ASM756505v1 (GCF_007565055.1) 14 NC_044562.1 (59296447..59652262)
100 previous assembly Rrox_v1 (GCF_000769185.1) Unplaced Scaffold NW_010795197.1 (538569..681952, complement)

Chromosome 14 - NC_044562.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115893301 Neighboring gene uncharacterized LOC115893269 Neighboring gene uncharacterized LOC104660459 Neighboring gene twist family bHLH transcription factor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone deacetylase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhinopithecus roxellana Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM756505v1 Primary Assembly

Genomic

  1. NC_044562.1 Reference ASM756505v1 Primary Assembly

    Range
    59296447..59652262
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030916068.1 → XP_030771928.1  histone deacetylase 4 isoform X1

    UniProtKB/TrEMBL
    A0A2K6Q6D6
    Conserved Domains (2) summary
    cd10162
    Location:91 → 152
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:654 → 1062
    HDAC4; Histone deacetylase 4

  2. XM_030916074.1 → XP_030771934.1  histone deacetylase 4 isoform X4

    UniProtKB/TrEMBL
    A0A2K6Q6D6
    Conserved Domains (2) summary
    cd10162
    Location:91 → 152
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:654 → 1057
    HDAC4; Histone deacetylase 4

  3. XM_030916075.1 → XP_030771935.1  histone deacetylase 4 isoform X5

    UniProtKB/TrEMBL
    A0A2K6Q6C9
    Conserved Domains (3) summary
    cd10162
    Location:91 → 152
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:649 → 1052
    HDAC4; Histone deacetylase 4
    pfam15258
    Location:392 → 488
    FAM222A; Protein family of FAM222A

  4. XM_030916072.1 → XP_030771932.1  histone deacetylase 4 isoform X2

    UniProtKB/TrEMBL
    A0A2K6Q6D6
    Conserved Domains (2) summary
    cd10162
    Location:91 → 152
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:652 → 1060
    HDAC4; Histone deacetylase 4

  5. XM_030916073.1 → XP_030771933.1  histone deacetylase 4 isoform X3

    UniProtKB/TrEMBL
    A0A2K6Q6C4, A0A2K6Q6C9
    Conserved Domains (3) summary
    cd10162
    Location:91 → 152
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:649 → 1057
    HDAC4; Histone deacetylase 4
    pfam15258
    Location:392 → 488
    FAM222A; Protein family of FAM222A

  6. XM_030916071.1 → XP_030771931.1  histone deacetylase 4 isoform X1

    UniProtKB/TrEMBL
    A0A2K6Q6D6
    Conserved Domains (2) summary
    cd10162
    Location:91 → 152
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:654 → 1062
    HDAC4; Histone deacetylase 4

  7. XM_030916070.1 → XP_030771930.1  histone deacetylase 4 isoform X1

    UniProtKB/TrEMBL
    A0A2K6Q6D6
    Conserved Domains (2) summary
    cd10162
    Location:91 → 152
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:654 → 1062
    HDAC4; Histone deacetylase 4

  8. XM_030916078.1 → XP_030771938.1  histone deacetylase 4 isoform X6

    UniProtKB/TrEMBL
    A0A2K6Q6C9
    Conserved Domains (2) summary
    cd10162
    Location:64 → 125
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:627 → 1035
    HDAC4; Histone deacetylase 4

  9. XM_030916077.1 → XP_030771937.1  histone deacetylase 4 isoform X6

    UniProtKB/TrEMBL
    A0A2K6Q6C9
    Conserved Domains (2) summary
    cd10162
    Location:64 → 125
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:627 → 1035
    HDAC4; Histone deacetylase 4

  10. XM_030916076.1 → XP_030771936.1  histone deacetylase 4 isoform X6

    UniProtKB/TrEMBL
    A0A2K6Q6C9
    Conserved Domains (2) summary
    cd10162
    Location:64 → 125
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:627 → 1035
    HDAC4; Histone deacetylase 4
Nucleotide Protein
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