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Mycbpap MYCBP associated protein [ Mus musculus (house mouse) ]

Gene ID: 104601, updated on 4-Jan-2023

Summary

Official Symbol
Mycbpapprovided by MGI
Official Full Name
MYCBP associated proteinprovided by MGI
Primary source
MGI:MGI:2388726
See related
Ensembl:ENSMUSG00000039110 AllianceGenome:MGI:2388726
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AMAM-1; AMAP-1; 4932408B01Rik
Summary
Predicted to act upstream of or within cell differentiation and spermatogenesis. Predicted to be located in cytoplasm. Is expressed in 4th ventricle lateral recess; choroid plexus; lateral ventricle choroid plexus; and pancreas epithelium. Orthologous to human MYCBPAP (MYCBP associated protein). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 46.8) and lung adult (RPKM 2.1) See more
Orthologs
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Genomic context

See Mycbpap in Genome Data Viewer
Location:
11; 11 D
Exon count:
22
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (94392173..94423219, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (94501347..94532386, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene spermatogenesis associated 20 Neighboring gene epsin 3 Neighboring gene predicted gene, 51873 Neighboring gene predicted gene, 35650 Neighboring gene radical S-adenosyl methionine domain containing 1 Neighboring gene acyl-CoA synthetase family member 2 Neighboring gene chondroadherin

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables clathrin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables molecular_function ND
No biological Data available
more info
 
enables phospholipid binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
acts_upstream_of_or_within cell differentiation IEA
Inferred from Electronic Annotation
more info
 
involved_in endocytosis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within spermatogenesis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of clathrin vesicle coat IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in endosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
MYCBP-associated protein
Names
AMY-1-binding protein 1
AMY1-associating protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001415760.1NP_001402689.1  MYCBP-associated protein isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL645809
  2. NM_170671.3NP_733771.3  MYCBP-associated protein isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL645809
    Consensus CDS
    CCDS48887.1
    Related
    ENSMUSP00000091477.4, ENSMUST00000093945.10

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    94392173..94423219 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006531938.5XP_006532001.1  MYCBP-associated protein isoform X1

    Conserved Domains (1) summary
    pfam14646
    Location:241658
    MYCBPAP; MYCBP-associated protein family
  2. XM_030245457.1XP_030101317.1  MYCBP-associated protein isoform X3

    UniProtKB/TrEMBL
    A0A668KL73
    Related
    ENSMUSP00000159222.2, ENSMUST00000239238.2
    Conserved Domains (1) summary
    pfam14646
    Location:194611
    MYCBPAP; MYCBP-associated protein family
  3. XM_006531939.4XP_006532002.1  MYCBP-associated protein isoform X2

    Conserved Domains (1) summary
    pfam14646
    Location:241658
    MYCBPAP; MYCBP-associated protein family

RNA

  1. XR_388315.4 RNA Sequence

  2. XR_003949210.2 RNA Sequence

    Related
    ENSMUST00000123496.8