U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC104583437 MADS-box protein SVP-like [ Brachypodium distachyon (stiff brome) ]

Gene ID: 104583437, updated on 9-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC104583437
Gene description
MADS-box protein SVP-like
Locus tag
BRADI_3g04880v3
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 3
Exon count:
1
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 3 NC_016133.3 (3352399..3353496)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 3 NC_016133.2 (3340691..3341788)

Chromosome 3 - NC_016133.3Genomic Context describing neighboring genes Neighboring gene probable beta-1,3-galactosyltransferase 2 Neighboring gene uncharacterized LOC104583436 Neighboring gene pentatricopeptide repeat-containing protein At5g56310 Neighboring gene ubiquitin thioesterase OTU1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genome-wide analysis of the MADS-box gene family in Brachypodium distachyon. Wei B, et al. PLoS One, 2014. PMID 24454749, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
MADS-box protein SVP-like
Names
MADS-box transcription factor 51

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001303025.1 → NP_001289954.1  MADS-box protein SVP-like

    See identical proteins and their annotated locations for NP_001289954.1

    Status: PROVISIONAL

    Source sequence(s)
    KF469345
    UniProtKB/TrEMBL
    A0A0Q3HZ69, I1HXK1
    Conserved Domains (2) summary
    cd00265
    Location:15 → 87
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam11221
    Location:101 → 138
    Med21; Subunit 21 of Mediator complex

RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016133.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    3352399..3353496
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases