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MGAT3-AS1 MGAT3 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 104502417, updated on 13-May-2022

Summary

Official Symbol
MGAT3-AS1provided by HGNC
Official Full Name
MGAT3 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:51356
See related
Ensembl:ENSG00000227188 AllianceGenome:HGNC:51356
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TapSAKI
Expression
Biased expression in small intestine (RPKM 1.5), duodenum (RPKM 0.8) and 11 other tissues See more
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Genomic context

See MGAT3-AS1 in Genome Data Viewer
Location:
22q13.1
Exon count:
2
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (39475807..39476822, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (39946430..39947445, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (39871812..39872827, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene TGF-beta activated kinase 1 (MAP3K7) binding protein 1 Neighboring gene uncharacterized LOC100506472 Neighboring gene CRISPRi-validated cis-regulatory element chr22.2018 Neighboring gene beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase Neighboring gene Sharpr-MPRA regulatory region 8945 Neighboring gene uncharacterized LOC105373035 Neighboring gene mitochondrial elongation factor 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Other Names

  • transcript predicting survival in AKI (acute kidney injury)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126469.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL022312
    Related
    ENST00000432239.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    39475807..39476822 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    39946430..39947445 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)