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0610010K14Rik RIKEN cDNA 0610010K14 gene [ Mus musculus (house mouse) ]

Gene ID: 104457, updated on 31-Jan-2019

Summary

Official Symbol
0610010K14Rikprovided by MGI
Official Full Name
RIKEN cDNA 0610010K14 geneprovided by MGI
Primary source
MGI:MGI:1915609
See related
Ensembl:ENSMUSG00000020831
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Bap18; AL033328; AU045833; 1110020A23Rik
Expression
Ubiquitous expression in CNS E11.5 (RPKM 52.3), CNS E14 (RPKM 43.7) and 28 other tissues See more
Orthologs

Genomic context

See 0610010K14Rik in Genome Data Viewer
Location:
11; 11 B3
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (70235204..70237914, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (70048706..70051416, complement)

Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene microRNA 497b Neighboring gene microRNA 195a Neighboring gene microRNA 497 Neighboring gene ribonuclease, RNase K Neighboring gene predicted gene, 40191 Neighboring gene arachidonate 12-lipoxygenase

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
chromatin organization IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
MLL1 complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
MLL1 complex ISO
Inferred from Sequence Orthology
more info
 
NURF complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
NURF complex ISO
Inferred from Sequence Orthology
more info
 
cytosol ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
chromatin complexes subunit BAP18
Names
BPTF-associated protein of 18 kDa
MLL1/MLL complex subunit C17orf49 homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001177601.1NP_001171072.1  chromatin complexes subunit BAP18 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and it encodes the longer protein (isoform 1).
    Source sequence(s)
    AA189586, AK003842, CK791552, EL959640
    Consensus CDS
    CCDS48834.1
    UniProtKB/Swiss-Prot
    Q9DCT6
    UniProtKB/TrEMBL
    D3Z687
    Related
    ENSMUSP00000104216.3, ENSMUST00000108576.9
    Conserved Domains (2) summary
    smart00717
    Location:4177
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:4177
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
  2. NM_001177603.1NP_001171074.1  chromatin complexes subunit BAP18 isoform 3

    See identical proteins and their annotated locations for NP_001171074.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an alternate, in-frame exon in the 3' coding region, compared to variant 1. The resulting protein (isoform 3) is shorter when it is compared to isoform 1.
    Source sequence(s)
    AA189586, AW557771, CB192659
    Consensus CDS
    CCDS48833.1
    UniProtKB/Swiss-Prot
    Q9DCT6
    Related
    ENSMUSP00000021181.6, ENSMUST00000021181.12
    Conserved Domains (2) summary
    smart00717
    Location:4177
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:4177
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
  3. NM_001177606.1NP_001171077.1  chromatin complexes subunit BAP18 isoform 5

    See identical proteins and their annotated locations for NP_001171077.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) lacks two alternate, in-frame exons, compared to variant 1. The resulting protein (isoform 5) is shorter when it is compared to isoform 1.
    Source sequence(s)
    AA189586, AK003842, AK169173
    Consensus CDS
    CCDS48832.1
    UniProtKB/Swiss-Prot
    Q9DCT6
    Related
    ENSMUSP00000104220.1, ENSMUST00000108579.7
  4. NM_001177607.1NP_001171078.1  chromatin complexes subunit BAP18 isoform 6

    See identical proteins and their annotated locations for NP_001171078.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) lacks two alternate, in-frame exons and uses a different splice site in the 3' UTR, compared to variant 1. The resulting protein (isoform 6) has a shorter and distinct C-terminue when it is compared to isoform 1.
    Source sequence(s)
    AA189586, AK003842, BE861439
    Consensus CDS
    CCDS48831.1
    UniProtKB/Swiss-Prot
    Q9DCT6
    UniProtKB/TrEMBL
    A2CF83
    Related
    ENSMUSP00000104215.2, ENSMUST00000108575.8
  5. NM_026757.2NP_081033.1  chromatin complexes subunit BAP18 isoform 4

    See identical proteins and their annotated locations for NP_081033.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks an alternate, in-frame exon in the 5' coding region and uses a different splice site in the 3' coding region, compared to variant 1. The resulting protein (isoform 4) is shorter and has a distinct C-terminus when compared to isoform 1.
    Source sequence(s)
    AA189586, AK003842
    Consensus CDS
    CCDS24940.1
    UniProtKB/Swiss-Prot
    Q9DCT6
    Related
    ENSMUSP00000099629.3, ENSMUST00000102569.9
  6. NM_145758.1NP_665701.1  chromatin complexes subunit BAP18 isoform 2

    See identical proteins and their annotated locations for NP_665701.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses a different splice site in the 3' coding region, compared to variant 1. The resulting protein (isoform 2) has a shorter and distinct C-terminus when it is compared to isoform 1.
    Source sequence(s)
    AA189586, AK002491, AK003842
    Consensus CDS
    CCDS48835.1
    UniProtKB/Swiss-Prot
    Q9DCT6
    Related
    ENSMUSP00000104219.2, ENSMUST00000108578.8
    Conserved Domains (2) summary
    smart00717
    Location:4177
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:4177
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

    Range
    70235204..70237914 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017314213.1XP_017169702.1  chromatin complexes subunit BAP18 isoform X1

Reference GRCm38.p4 NOD/MrkTac

Genomic

  1. NT_187026.1 Reference GRCm38.p4 NOD/MrkTac

    Range
    339710..342421 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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